Project
Integration of structure/function predictions into the CERI emerging threat genomic surveillance pipeline
The Centre for Epidemiology Research and Innovation collects high-precision and timely data on emerging health threats by carrying out a world-class genomic surveillance effort.
Project
Species delimitation from genetic data – a quantitative assessment of a spatiotemporal approach
Despite its fundamental status in biology, the species category definition remains controversial and quantitative methods to test species status are in their infancy.
Project
Taking Evolutionary Biology Beyond the Gene
Evolution depends on the copying of genetic information (DNA) with the incorporation of changes (mutations) that are inherited by subsequent generations.
Publication
An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma
Singh, Nivedita, Martin Eberhardt, Olaf Wolkenhauer, Julio Vera and Shailendra K. Gupta. 2020. An integrative network-driven pipeline for sy...
Publication
Improving the reuse of computational models through version control
Dagmar Waltemath, Ron Henkel, RobertHaelke, Olaf Wolkenhauer et al. 2013. Improving the reuse of computational models through version contro...
Publication
Cooperative gene regulation by microRNA pairs and their identification using a computational workflow
Ulf Schmitz, Ulf, Xin Lai, Felix Winter, Olaf Wolkenhauer et al. 2014. Cooperative gene regulation by microRNA pairs and their identificatio...
Publication
Combining Computational Models, Semantic Annotations and Simulation Experiments in a Graph Database
Henkel, R., O. Wolkenhauer, and D. Waltemath. 2015. Combining Computational Models, Semantic Annotations and Simulation Experiments in a Gra...
Publication
Annotation-Based Feature Extraction from Sets of SBML Models
Alm, Rebekka, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, and Ron Henkel. 2015. Annotation-Based Feature Extraction from Sets of SBM...
Publication
Naïve Bayes Classifier Predicts Functional microRNA Target Interactions in Colorectal Cancer
Amirkhah, Raheleh, Ali Farazmand, Shailendra K. Gupta, Hamed Ahmadi, Olaf Wolkenhauer, and Ulf Schmitz. 2015. Naïve Bayes Classifier Predict...
Publication
TRAPLINE: A Standardized and Automated Pipeline for RNA Sequencing Data Analysis, Evaluation and Annotation
Wolfien, Markus, Christian Rimmbach, Ulf Schmitz, Julia Jeannine Jung, Stefan Krebs, Gustav Steinhoff, Robert David, and Olaf Wolkenhauer. 2...
Publication
An Algorithm to Detect and Communicate the Differences in Computational Models Describing Biological Systems
Scharm, Martin, Olaf Wolkenhauer, and Dagmar Waltemath. 2016. An Algorithm to Detect and Communicate the Differences in Computational Models...
Publication
The RNA World in the 21st Century—a Systems Approach to Finding Non-Coding Keys to Clinical Questions
Schmitz, Ulf, Hojjat Naderi-Meshkin, Shailendra K Gupta, Olaf Wolkenhauer, and Julio Vera. 2016. The RNA World in the 21st Century—a Systems...