- Nationality
- 🇩🇪 Germany
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publication
Investigating the two-moment characterization of subcellular biochemical networks
M Ullah and O Wolkenhauer. 2009. Investigating the two-moment characterization of subcellular biochemical networks. Journal of Theoretical Biology, 260. pp...
publication
Thresholds in transient dynamics of signal transduction pathways
K Rateitschak and O Wolkenhauer. 2009. Thresholds in transient dynamics of signal transduction pathways. IET Systems Biology
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The complexity of cell-biological systems
O Wolkenhauer and A Muir. 2009. The complexity of cell-biological systems. Handbook of the Philosophy of Science, 16. Philosophy of Complexity, Chaos and N...
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A stem cell niche dominance theorem
Olaf Wolkenhauer, Darryl K Shibata, Mihajlo D Mesarovi? 2011. A stem cell niche dominance theorem. BMC Systems Biology, 5 (4), 16 pp. http://www.biomedcent...
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An integrative network-driven pipeline for systematic identification of lncRNA-associated regulatory network motifs in metastatic melanoma
Singh, Nivedita, Martin Eberhardt, Olaf Wolkenhauer, Julio Vera and Shailendra K. Gupta. 2020. An integrative network-driven pipeline for systematic identi...
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Cardiomyocyte Transplantation after Myocardial Infarction Alters the Immune Response in the Heart
Vasudevan, Praveen, Markus Wolfien, Heiko Lemcke, Cajetan Immanuel Lang, Anna Skorska, Ralf Gaebel, Dirk Koczan, Tobias Lindner, Robby Engelmann, Brigitte ...
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Accounting for Randomness in Measurement and Sampling in Studying Cancer Cell Population Dynamics
Ghavami, Siavash, Mukhtar Ullah, Farshad Lahouti, Olaf Wolkenhauer, and Michael Linnebacher. 2014. Accounting for Randomness in Measurement and Sampling in...
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Age-Dependent Effects of UCP2 Deficiency on Experimental Acute Pancreatitis in Mice
Sarah Müller, Hannah Kaiser, Burkhard Krüger, Brit Fitzner, Falko Lange, Cristin N. Bock, Horst Nizze, Saleh M. Ibrahim, Georg Fuellen, Olaf Wolkenhauer an...
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An Algorithm to Detect and Communicate the Differences in Computational Models Describing Biological Systems
Scharm, Martin, Olaf Wolkenhauer, and Dagmar Waltemath. 2016. An Algorithm to Detect and Communicate the Differences in Computational Models Describing Bio...
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An Explicit Numerical Scheme to Efficiently Simulate Molecular Diffusion in Environments with Dynamically Changing Barriers
Kossow, Christina, Stefan Rybacki, Thomas Millat, Katja Rateitschak, Robert Jaster, Adelinde M. Uhrmacher, and Olaf Wolkenhauer. 2015. An Explicit Numerica...
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Analysing the impact of nucleo-cytoplasmic shuttling of beta-catenin and its antagonists APC, Axin and GSK3 on Wnt/beta-catenin signalling
Yvonne Schmitz, Katja Rateitschak and Olaf Wolkenhauer. 2013. Analysing the impact of nucleo-cytoplasmic shuttling of beta-catenin and its antagonists APC,...
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Analysis of cell adhesion during early stages of colon cancer based on an extended multi-valued logic approach
Guebel, Daniel V.; Schmitz, Ulf; Wolkenhauer, Olaf; et al. 2012. Analysis of cell adhesion during early stages of colon cancer based on an extended multi-v...
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Annotation-Based Feature Extraction from Sets of SBML Models
Alm, Rebekka, Dagmar Waltemath, Markus Wolfien, Olaf Wolkenhauer, and Ron Henkel. 2015. Annotation-Based Feature Extraction from Sets of SBML Models. Journ...
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Anti-Inflammatory Effects of Reactive Oxygen Species – a Multi-Valued Logical Model Validated by Formal Concept Analysis
Wollbold, Johannes, Robert Jaster, Sarah Müller, Katja Rateitschak, and Olaf Wolkenhauer. 2014. Anti-Inflammatory Effects of Reactive Oxygen Species – a Mu...
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Autocrine TGF-β/ZEB/microRNA-200 Signal Transduction Drives Epithelial-Mesenchymal Transition: Kinetic Models Predict Minimal Drug Dose to Inhibit Metastasis
Rateitschak, Katja, Lars Kaderali, Olaf Wolkenhauer, and Robert Jaster. 2016. Autocrine TGF-β/ZEB/microRNA-200 Signal Transduction Drives Epithelial-Mesenc...
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COMODI: An Ontology to Characterise Differences in Versions of Computational Models in Biology
Scharm, Martin, Dagmar Waltemath, Pedro Mendes, and Olaf Wolkenhauer. 2016. COMODI: An Ontology to Characterise Differences in Versions of Computational Mo...
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Coenzyme A-Transferase-Independent Butyrate Re-Assimilation in Clostridium Acetobutylicum—evidence from a Mathematical Model
Millat, Thomas, Christine Voigt, Holger Janssen, Clare M. Cooksley, Klaus Winzer, Nigel P. Minton, Hubert Bahl, Ralf-Jörg Fischer, and Olaf Wolkenhauer. 20...
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Combining Computational Models, Semantic Annotations and Simulation Experiments in a Graph Database
Henkel, R., O. Wolkenhauer, and D. Waltemath. 2015. Combining Computational Models, Semantic Annotations and Simulation Experiments in a Graph Database. Da...
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Cooperative gene regulation by microRNA pairs and their identification using a computational workflow
Ulf Schmitz, Ulf, Xin Lai, Felix Winter, Olaf Wolkenhauer et al. 2014. Cooperative gene regulation by microRNA pairs and their identification using a compu...
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Diagrams as locality aids for explanation and model construction in cell biology
Jones, Nicholaos; Wolkenhauer, Olaf. 2012. Diagrams as locality aids for explanation and model construction in cell biology. BIOLOGY & PHILOSOPHY, 27 (5), ...
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Dissecting Long-Term Glucose Metabolism Identifies New Susceptibility Period for Metabolic Dysfunction in Aged Mice
Chauhan, Anuradha, Heike Weiss, Franziska Koch, Saleh M. Ibrahim, Julio Vera, Olaf Wolkenhauer, and Markus Tiedge. 2015. Dissecting Long-Term Glucose Metab...
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Enabling multiscale modeling in systems medicine
Olaf Wolkenhauer, Charles Auffray, Olivier Brass, et al. 2014. Enabling multiscale modeling in systems medicine. Genome Medicine, 6 (3) Article Number 21, ...
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Explanation and Organizing Principles in Systems Biology
Breidenmoser, Tobias and Olaf Wolkenhauer. 2015. Explanation and Organizing Principles in Systems Biology. Pp. 249–64 in Explanation in Biology. http://lin...
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Hybrid modeling of the crosstalk between signaling and transcriptional networks using ordinary differential equations and multi-valued logic
Faiz M. Khan, Ulf Schmitz, Svetoslav Nikolov, David Putzer, Brigitte M. Puetzer, Olaf Wolkenhauer and Julio Vera. 2014. Hybrid modeling of the crosstalk be...
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Improving the reuse of computational models through version control
Dagmar Waltemath, Ron Henkel, RobertHaelke, Olaf Wolkenhauer et al. 2013. Improving the reuse of computational models through version control. BIOINFORMATI...
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Kinetic Modeling-Based Detection of Genetic Signatures That Provide Chemoresistance via the E2F1-p73/DNp73-miR-205 Network
Julio Vera, Ulf Schmitz, Xin Lai, Olaf Wolkenhauer, et al. 2013. Kinetic Modeling-Based Detection of Genetic Signatures That Provide Chemoresistance via th...
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Mathematical modelling unravels regulatory mechanisms of interferon-gamma-induced STAT1 serine-phosphorylation and MUC4 expression in pancreatic cancer cells
Kossow, C.; Jose, D.; Jaster, R.; Wolkenhauer, Olaf et al. 2012. Mathematical modelling unravels regulatory mechanisms of interferon-gamma-induced STAT1 se...
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MicroRNA-mRNA Interactions in Colorectal Cancer and Their Role in Tumor Progression
Amirkhah, Raheleh, Ulf Schmitz, Michael Linnebacher, Olaf Wolkenhauer, and Ali Farazmand. 2015. MicroRNA-mRNA Interactions in Colorectal Cancer and Their R...
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Naïve Bayes Classifier Predicts Functional microRNA Target Interactions in Colorectal Cancer
Amirkhah, Raheleh, Ali Farazmand, Shailendra K. Gupta, Hamed Ahmadi, Olaf Wolkenhauer, and Ulf Schmitz. 2015. Naïve Bayes Classifier Predicts Functional mi...
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Network-Assisted Disease Classification and Biomarker Discovery
Strunz, Sonja, Olaf Wolkenhauer, and Alberto de la Fuente. 2016. Network-Assisted Disease Classification and Biomarker Discovery. Pp. 353–74 in. http://lin...
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Personalized Cancer Immunotherapy Using Systems Medicine Approaches
Gupta, Shailendra K, Tanushree Jaitly, Ulf Schmitz, Gerold Schuler, Olaf Wolkenhauer, and Julio Vera. 2016. Personalized Cancer Immunotherapy Using Systems...
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Proteolysis of beta-galactosidase following SigmaB activation in Bacillus subtilis
Liebal Ulf W.; Sappa Praveen K.; Millat Thomas; Wolkenhauer Olaf et al. 2012. Proteolysis of beta-galactosidase following SigmaB activation in Bacillus sub...
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Pushing Limits by Embracing Complexity
Wolkenhauer, Olaf. 2014. Pushing Limits by Embracing Complexity. IET Systems Biology 8 (6): 244–50. doi:10.1049/iet-syb.2014.0031.
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Quantitative modelling of amyloidogenic processing and its influence by SORLA in Alzheimer’s disease
Schmidt, Vanessa; Baum, Katharina; Lao ,Angelyn; Wolkenhauer, Olaf et al. 2012. Quantitative modelling of amyloidogenic processing and its influence by SOR...
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RNA Systems Biology for Cancer: From Diagnosis to Therapy
Amirkhah, Raheleh, Ali Farazmand, Olaf Wolkenhauer, and Ulf Schmitz. 2016. RNA Systems Biology for Cancer: From Diagnosis to Therapy. Pp. 305–30 in. http:/...
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Systems Approach to the Study of Brain Damage in the Very Preterm Newborn
Leviton, Alan, Pierre Gressens, Olaf Wolkenhauer, and Olaf Dammann. 2015. Systems Approach to the Study of Brain Damage in the Very Preterm Newborn. Fronti...
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Systems Medicine
Schmitz, Ulf and Olaf Wolkenhauer. 2016. Systems Medicine. edited by Ulf Schmitz and Olaf Wolkenhauer. New York, NY: Springer New York. http://link.springe...
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Systems biology and pediatric research Introduction
Parviz Minoo, Olaf Wolkenhauer and Susan Guttentag. 2013. Systems biology and pediatric research Introduction. Pedeatric Research, 73 (4), 499-501. doi: 10...
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TRAPLINE: A Standardized and Automated Pipeline for RNA Sequencing Data Analysis, Evaluation and Annotation
Wolfien, Markus, Christian Rimmbach, Ulf Schmitz, Julia Jeannine Jung, Stefan Krebs, Gustav Steinhoff, Robert David, and Olaf Wolkenhauer. 2016. TRAPLINE: ...
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The RNA World in the 21st Century—a Systems Approach to Finding Non-Coding Keys to Clinical Questions
Schmitz, Ulf, Hojjat Naderi-Meshkin, Shailendra K Gupta, Olaf Wolkenhauer, and Julio Vera. 2016. The RNA World in the 21st Century—a Systems Approach to Fi...
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The Role of microRNAs in the Resistance to Colorectal Cancer Treatments
Amirkhah, Raheleh, Ali Farazmand, Muhammad Irfan-Maqsood, Olaf Wolkenhauer, and Ulf Schmitz. 2015. The Role of microRNAs in the Resistance to Colorectal Ca...
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The road from systems biology to systems medicine
Olaf Wolkenhauer, Charles Auffray, Robert Jaster, et al. 2013. The road from systems biology to systems medicine. Pedeatric Research, 73 (4), 502-507. doi:...
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The role of theorem proving in systems biology
Wolkenhauer, Olaf; Shibata, Darryl; Mesarovic, Mihajlo D. 2012. The role of theorem proving in systems biology. JOURNAL OF THEORETICAL BIOLOGY, 300, pp. 57...
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Tumors as chaotic attractors
Svetoslav Nikolov, Olaf Wolkenhauer and Julio Vera. 2014. Tumors as chaotic attractors. Molecular BioSystems, 10 (2), 172-179.
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Understanding microRNA-Mediated Gene Regulatory Networks through Mathematical Modelling
Lai, Xin, Olaf Wolkenhauer, and Julio Vera. 2016. Understanding microRNA-Mediated Gene Regulatory Networks through Mathematical Modelling. Nucleic Acids Re...
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Why model?
Olaf Wolkenhauer. 2014. Why model? Froniers in Physiology, 5 (21), 1-14. doi:10.3389/fphys.2014.00021